DreEX0043331 @ danRer10
Exon Skipping
Gene
ENSDARG00000068365 | lmx1bb
Description
LIM homeobox transcription factor 1, beta b [Source:ZFIN;Acc:ZDB-GENE-050114-2]
Coordinates
chr8:33271745-33371142:-
Coord C1 exon
chr8:33370956-33371142
Coord A exon
chr8:33276226-33276458
Coord C2 exon
chr8:33271745-33271920
Length
233 bp
Sequences
Splice sites
3' ss Seq
TTTTCTCGTTGTCACTTCAGGTT
3' ss Score
9.09
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
GGACGGAGTGCCATCACCAGGCGGTGTGTGAGGGGTGCCAGCGGCCGATATCCGACCGCTTTCTGATGCGCGTCAACGAGTCTTCATGGCACGAGGAGTGTTTGCAATGCGCCGTGTGTCAACAACCGCTCACCACCAGCTGCTACTTCCGGGAGAGGAAACTTTACTGCAAATATGACTACCAACA
Seq A exon
GTTATTTGCGACCAAATGCAGCGGATGCCTGGAGAAAATTGCACCTACAGAATTTGTGATGCGGGCGCTGGAGTGTGTTTACCATCTCAACTGCTTCTGCTGCTGTGTATGTGACCGACAGCTGAGGAAAGGAGATGAGTTTGTGCTGAAGGACGGACAGTTGCTGTGCAAGAGCGATTATGAGAGGGAAAAAGACCTGCTCGGCTCTGTCAGCCCAGATGACTCAGATTCAG
Seq C2 exon
AGAAAAGCGAAGATGAGGAGCTGGATATCAAGCCGGAGAAAGGCTCGGGAGGCACCGGGAAGGGAGATGATGGGAAAGACCCTAGAAGACCCAAGAGACCACGTACCATCCTCACCACACAGCAGAGACGAGCCTTCAAGGCGTCGTTCGAGGTGTCTTCCAAACCCTGCCGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068365-'5-6,'5-5,7-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.152 C2=0.712
Domain overlap (PFAM):
C1:
PF0041217=LIM=PU(94.6=84.1)
A:
PF0041217=LIM=PD(3.6=2.5),PF0041217=LIM=WD(100=74.7)
C2:
PF0004624=Homeobox=PU(47.4=45.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TATCCGACCGCTTTCTGATGC
R:
AGGGTTTGGAAGACACCTCGA
Band lengths:
307-540
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]