GgaEX0000952 @ galGal3
Exon Skipping
Gene
ENSGALG00000000936 | F1NDZ5_CHICK
Description
NA
Coordinates
chr17:10786212-10875321:+
Coord C1 exon
chr17:10786212-10786345
Coord A exon
chr17:10871973-10872205
Coord C2 exon
chr17:10875143-10875321
Length
233 bp
Sequences
Splice sites
3' ss Seq
TCTGCCTCTCTTTCTTGCAGGCT
3' ss Score
12.29
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GATCGCTTTCTGATGAGGGTGAACGAGTCCTCCTGGCACGAGGAGTGTTTGCAGTGCGCGGTGTGTCAGCAAGCCCTCACCACCAGCTGCTACTTCCGGGACCGAAAGCTCTACTGCAAACAGGACTACCAACA
Seq A exon
GCTTTTTGCTGCCAAGTGCAGTGGCTGCATGGAAAAAATTGCCCCAACAGAATTTGTGATGAGAGCCCTGGAGTGTGTTTACCACTTAAGCTGCTTCTGTTGCTGTGTTTGTGAGCGACAGCTGAGAAAAGGGGATGAGTTTGTTCTTAAGGAAGGGCAGTTGCTCTGTAAAAGTGACTATGAGAAAGAGAAGGACCTGTTGAGCTCCGTCAGCCCAGACGATTCCGACTCAG
Seq C2 exon
TTAAAAGCGATGATGAAGATGGAGATGTTAAGCCCACCAAAGGACAAGTAACACAAGGAAAAGGAAGTGATGATGGGAAGGACCCAAGGAGACCTAAACGACCAAGGACAATACTCACTACGCAGCAGAGACGAGCATTCAAAGCATCCTTTGAAGTGTCTTCCAAGCCCTGTAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000936-'3-4,'3-3,5-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.114 C2=0.750
Domain overlap (PFAM):
C1:
PF0041217=LIM=FE(80.0=100)
A:
PF0041217=LIM=PD(3.6=2.5),PF0041217=LIM=WD(100=74.7)
C2:
PF0004624=Homeobox=PU(47.4=45.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGGGTGAACGAGTCCTCC
R:
TCCTACAGGGCTTGGAAGACA
Band lengths:
299-532
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]