RnoEX0050289 @ rn6
Exon Skipping
Gene
ENSRNOG00000017019 | Lmx1b
Description
LIM homeobox transcription factor 1 beta [Source:RGD Symbol;Acc:620843]
Coordinates
chr3:12612210-12685965:-
Coord C1 exon
chr3:12685779-12685965
Coord A exon
chr3:12614337-12614569
Coord C2 exon
chr3:12612210-12612391
Length
233 bp
Sequences
Splice sites
3' ss Seq
CCTCCTCTGTGCCCCCGCAGGCT
3' ss Score
12.37
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
GCTCCGACTGCCCGCATCCCGCCGTCTGCGAGGGCTGCCAGCGGCCCATCTCCGACCGCTTCCTGATGCGAGTCAACGAGTCGTCCTGGCACGAGGAGTGTTTGCAGTGCGCGGCATGTCAGCAAGCCCTCACCACCAGCTGCTACTTCCGGGATCGGAAACTGTACTGCAAACAAGACTACCAACA
Seq A exon
GCTCTTCGCGGCAAAGTGCAGCGGCTGCATGGAGAAGATCGCACCCACTGAGTTCGTCATGCGGGCGCTCGAGTGTGTGTACCACCTGGGCTGTTTCTGCTGCTGTGTGTGCGAGAGGCAGCTGCGGAAGGGTGATGAGTTCGTGCTCAAGGAGGGCCAGCTGCTGTGCAAGGGTGACTACGAGAAGGAGAAAGACCTCCTCAGCTCCGTGAGCCCGGATGAGTCTGACTCTG
Seq C2 exon
TGAAGAGTGAGGATGAAGATGGAGACATGAAGCCAGCCAAGGGGCAGGGCAGCCAGAATAAGGGCAGTGGGGATGACGGGAAGGACCCGAGAAGGCCCAAACGGCCCCGGACCATCCTCACCACACAGCAGCGAAGAGCTTTCAAGGCTTCGTTTGAGGTCTCCTCCAAGCCCTGTCGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017019-'1-4,'1-3,5-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.114 C2=0.754
Domain overlap (PFAM):
C1:
PF0041217=LIM=PU(94.6=84.1)
A:
PF0041217=LIM=PD(3.6=2.5),PF0041217=LIM=WD(100=74.7)
C2:
PF0004624=Homeobox=PU(47.4=44.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGATGCGAGTCAACGAGT
R:
AGGAGACCTCAAACGAAGCCT
Band lengths:
292-525
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]