GgaEX0000952 @ galGal4
Exon Skipping
Gene
ENSGALG00000000936 | LMX1B
Description
LIM/homeobox protein LMX-1.2 [Source:RefSeq peptide;Acc:NP_990689]
Coordinates
chr17:10059569-10148207:+
Coord C1 exon
chr17:10059569-10059758
Coord A exon
chr17:10144859-10145091
Coord C2 exon
chr17:10148029-10148207
Length
233 bp
Sequences
Splice sites
3' ss Seq
TCTGCCTCTCTTTCTTGCAGGCT
3' ss Score
12.29
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GGTCGGGAGTGCCCCGCATCCAGGCCGTGTGCGAAGGCTGCCAGAGGCCCATCTCGGATCGCTTTCTGATGAGGGTGAACGAGTCCTCCTGGCACGAGGAGTGTTTGCAGTGCGCGGTGTGTCAGCAAGCCCTCACCACCAGCTGCTACTTCCGGGACCGAAAGCTCTACTGCAAACAGGACTACCAACA
Seq A exon
GCTTTTTGCTGCCAAGTGCAGTGGCTGCATGGAAAAAATTGCCCCAACAGAATTTGTGATGAGAGCCCTGGAGTGTGTTTACCACTTAAGCTGCTTCTGTTGCTGTGTTTGTGAGCGACAGCTGAGAAAAGGGGATGAGTTTGTTCTTAAGGAAGGGCAGTTGCTCTGTAAAAGTGACTATGAGAAAGAGAAGGACCTGTTGAGCTCCGTCAGCCCAGACGATTCCGACTCAG
Seq C2 exon
TTAAAAGCGATGATGAAGATGGAGATGTTAAGCCCACCAAAGGACAAGTAACACAAGGAAAAGGAAGTGATGATGGGAAGGACCCAAGGAGACCTAAACGACCAAGGACAATACTCACTACGCAGCAGAGACGAGCATTCAAAGCATCCTTTGAAGTGTCTTCCAAGCCCTGTAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000936_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.114 C2=0.750
Domain overlap (PFAM):
C1:
PF0041217=LIM=PU(94.6=82.8)
A:
PF0041217=LIM=PD(3.6=2.5),PF0041217=LIM=WD(100=74.7)
C2:
PF0004624=Homeobox=PU(47.4=45.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGGGTGAACGAGTCCTCC
R:
TCCTACAGGGCTTGGAAGACA
Band lengths:
299-532
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]