MmuEX6100695 @ mm9
Exon Skipping
Gene
ENSMUSG00000038765 | Lmx1b
Description
LIM homeobox transcription factor 1 beta [Source:MGI Symbol;Acc:MGI:1100513]
Coordinates
chr2:33422668-33487787:-
Coord C1 exon
chr2:33487735-33487787
Coord A exon
chr2:33424570-33424802
Coord C2 exon
chr2:33422668-33422849
Length
233 bp
Sequences
Splice sites
3' ss Seq
GCCTCCTCTGTGCCCCGCAGGCT
3' ss Score
10.3
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
CAACGCACATGAACTTGCAAGAGCGGAGCGGGGCTGAGCGCGATGGGCCTGAG
Seq A exon
GCTCTTCGCGGCAAAGTGCAGCGGCTGCATGGAGAAGATCGCCCCTACCGAGTTCGTCATGCGGGCGCTGGAGTGTGTGTACCACTTGGGCTGTTTCTGCTGCTGTGTGTGCGAGAGGCAACTGCGCAAGGGGGACGAGTTCGTGCTCAAGGAGGGCCAGCTGCTGTGCAAGGGTGACTATGAGAAGGAGAAAGACCTGCTCAGCTCCGTGAGCCCGGACGAGTCTGACTCTG
Seq C2 exon
TGAAGAGTGAGGATGAAGATGGAGACATGAAGCCGGCCAAGGGGCAGGGCAGCCAGAGTAAAGGCAGTGGAGATGACGGGAAAGACCCGAGAAGGCCCAAACGGCCCCGAACCATCCTCACCACACAGCAGCGAAGAGCTTTCAAGGCATCCTTTGAGGTCTCCTCCAAGCCCTGTCGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038765-'2-3,'2-2,3-3=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.133 C2=0.763
Domain overlap (PFAM):
C1:
NO
A:
PF0041217=LIM=PD(3.6=2.5),PF0041217=LIM=WD(100=74.7)
C2:
PF0004624=Homeobox=PU(47.4=44.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGCACATGAACTTGCAAGAGC
R:
CGACAGGGCTTGGAGGAGA
Band lengths:
228-461
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: