GgaEX1034356 @ galGal4
Exon Skipping
Gene
ENSGALG00000010448 | LTBP1
Description
latent transforming growth factor beta binding protein 1 [Source:HGNC Symbol;Acc:HGNC:6714]
Coordinates
chr3:30530049-30537354:-
Coord C1 exon
chr3:30537235-30537354
Coord A exon
chr3:30532301-30532387
Coord C2 exon
chr3:30530049-30530171
Length
87 bp
Sequences
Splice sites
3' ss Seq
TGCTTTCTTTATCTTCACAGACA
3' ss Score
9.67
5' ss Seq
AAGGTTTCA
5' ss Score
-2.05
Exon sequences
Seq C1 exon
ACATTGATGAATGCACAACCCCAACTACTTGTCCAGATGCACAGTGTATTAATGCTCCTGGCTCTTACCAGTGCATACCCTGCAGAGTGGGATTCAGAGGCTGGAATGGACAGTGCCATG
Seq A exon
ACATAAACGAATGTCAATATGGCAATCTCTGTGCAAATGGACATTGTGAAAATATTGAGGGGTCTTTCAGATGTATTTGTGGCCAAG
Seq C2 exon
ATATAGATGAATGCCAAGACAGATCCCTGTGTGTCAATGGACGCTGCAGGAACACAGAAGGGTCTTTCAGATGTGTTTGTAGCCAAGGTTACGTTCTGTCTGCTACTGGAGATCAGTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010448_MULTIEX3-11/15=10-12
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=70.2)
A:
NA
C2:
PF062476=Plasmod_Pvs28=FE(25.9=100),PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCACAACCCCAACTACTTGT
R:
GACCCTTCTGTGTTCCTGCAG
Band lengths:
173-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]