MmuEX6079390 @ mm10
Exon Skipping
Gene
ENSMUSG00000001870 | Ltbp1
Description
latent transforming growth factor beta binding protein 1 [Source:MGI Symbol;Acc:MGI:109151]
Coordinates
chr17:75310156-75315125:+
Coord C1 exon
chr17:75310156-75310278
Coord A exon
chr17:75312976-75313098
Coord C2 exon
chr17:75315003-75315125
Length
123 bp
Sequences
Splice sites
3' ss Seq
GTCATCATTTATGTTGACAGATA
3' ss Score
6.62
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
ATGTGGACGAGTGCCTGCAGCCAAAGGTCTGTACGAATGGTTCCTGCACCAACCTGGAAGGGTCCTACATGTGTTCCTGCCACAGGGGCTACAGCCCCACACCAGACCATAGACACTGTCAAG
Seq A exon
ATATTGATGAATGCCAACAAGGGAATCTCTGCATGAATGGGCAGTGCAGAAATACCGATGGCTCCTTCCGGTGTACCTGTGGACAGGGCTATCAGCTGTCAGCAGCTAAAGACCAATGTGAAG
Seq C2 exon
ATATTGATGAATGCGAGCACCATCACCTCTGCTCTCACGGGCAGTGCAGGAACACAGAGGGCTCCTTCCAGTGTGTGTGCAACCAGGGTTACAGAGCATCTGTACTTGGAGACCACTGTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001870-'43-42,'43-41,45-42
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGGACGAGTGCCTGCAG
R:
CCTCACAGTGGTCTCCAAGTAC
Band lengths:
246-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types