GgaEX1034363 @ galGal3
Exon Skipping
Gene
ENSGALG00000010448 | LTBP1
Description
NA
Coordinates
chr3:32425153-32429458:-
Coord C1 exon
chr3:32429333-32429458
Coord A exon
chr3:32428474-32428596
Coord C2 exon
chr3:32425153-32425322
Length
123 bp
Sequences
Splice sites
3' ss Seq
TCTCTTTTCCATCTCTGCAGATT
3' ss Score
12.46
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
ATATTAATGAGTGTAATCAGACACCTCATCTCTGTTCCCTTGGACGCTGTGAAAATACTGAAGGAAGTTTCCTATGTATTTGCCAAGCTGGATTCATGGCCAGTGAAGATGGAACTGACTGCATTG
Seq A exon
ATTTTGATGAATGTTCACGGCCTCATACTTGTGGGGAAGGTTTCTGTATAAATACTGTTGGCTCGTATAGGTGTGAATATTGTGACAGTGGGTACCAGATGAACAGGAGAGGTGAATGTGAAG
Seq C2 exon
ACATTGATGAATGCACAACCCCAACTACTTGTCCAGATGCACAGTGTATTAATGCTCCTGGCTCTTACCAGTGCATACCCTGCAGAGTGGGATTCAGAGGCTGGAATGGACAGTGCCATGGTATGTTGAGTACTGTTACTGTTTCTGTCTCTGGTTATGGCTCTTGTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010448-'16-28,'16-27,17-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=70.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCCTTGGACGCTGTGAAA
R:
AGAGCCATAACCAGAGACAGA
Band lengths:
257-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]