RnoEX6027675 @ rn6
Exon Skipping
Gene
ENSRNOG00000033090 | Ltbp1
Description
latent transforming growth factor beta binding protein 1 [Source:RGD Symbol;Acc:68379]
Coordinates
chr6:21301779-21306829:-
Coord C1 exon
chr6:21306704-21306829
Coord A exon
chr6:21305485-21305607
Coord C2 exon
chr6:21301779-21301898
Length
123 bp
Sequences
Splice sites
3' ss Seq
ATACTCTGTGTTTCATGCAGATG
3' ss Score
9.87
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
ACATTGATGAATGTGCTCAGGCCCAGCATCTCTGCTCCCAGGGTCGCTGTGAGAACACAGAGGGAAGTTTCCTGTGTATTTGCCCAGCAGGGTTTATGGCCAGTGAGGAGGGTTCTAACTGTATAG
Seq A exon
ATGTGGATGAATGTCTGAGGCCCGATGTGTGTAGGGACGGCCGCTGCATCAACACTGCTGGGGCCTTCCGATGCGAATACTGTGACAGTGGGTACCGGATGTCACGACGGGGCCACTGTGAGG
Seq C2 exon
ATATCGATGAGTGTCTGACCCCAAGTACCTGTCCCGAGGAACAATGCGTGAATTCCCCAGGTTCTTACCAGTGTGTGCCCTGCACAGAAGGGTTCCGTGGCTGGAATGGACAATGCCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033090-'29-29,'29-28,30-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.1),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGATGAATGTGCTCAGGCCC
R:
GAGGCATTGTCCATTCCAGCC
Band lengths:
242-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]