RnoEX0051346 @ rn6
Exon Skipping
Gene
ENSRNOG00000033090 | Ltbp1
Description
latent transforming growth factor beta binding protein 1 [Source:RGD Symbol;Acc:68379]
Coordinates
chr6:21288429-21305607:-
Coord C1 exon
chr6:21305485-21305607
Coord A exon
chr6:21301779-21301898
Coord C2 exon
chr6:21288429-21288551
Length
120 bp
Sequences
Splice sites
3' ss Seq
CTGACTTCTCAATGTTCCAGATA
3' ss Score
9.06
5' ss Seq
TCGGTAGGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
ATGTGGATGAATGTCTGAGGCCCGATGTGTGTAGGGACGGCCGCTGCATCAACACTGCTGGGGCCTTCCGATGCGAATACTGTGACAGTGGGTACCGGATGTCACGACGGGGCCACTGTGAGG
Seq A exon
ATATCGATGAGTGTCTGACCCCAAGTACCTGTCCCGAGGAACAATGCGTGAATTCCCCAGGTTCTTACCAGTGTGTGCCCTGCACAGAAGGGTTCCGTGGCTGGAATGGACAATGCCTCG
Seq C2 exon
ATGTGGACGAGTGCCTGCAGCCAAAGGTCTGTACCAATGGTTCCTGCACCAACCTGGAAGGCTCCTACATGTGTTCCTGCCACAAGGGCTACAGCCCCACACCAGACCATAGACACTGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033090-'30-30,'30-29,31-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.1),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGATGAATGTCTGAGGCCC
R:
TGACAGTGTCTATGGTCTGGTGT
Band lengths:
242-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]