DreEX6054089 @ danRer10
Exon Skipping
Gene
ENSDARG00000056922 | ltbp1
Description
latent transforming growth factor beta binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-091202-8]
Coordinates
chr17:23048908-23053019:+
Coord C1 exon
chr17:23048908-23049033
Coord A exon
chr17:23052630-23052749
Coord C2 exon
chr17:23052897-23053019
Length
120 bp
Sequences
Splice sites
3' ss Seq
AATGTTCTCTCTGTGTGTAGATA
3' ss Score
9.65
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
ATGTCGACGAGTGTGCGGAGAACCCAAGTTTGTGTGCTAATGGCCGTTGTCAGAACACTCCAGGCGGATTCCTGTGTGTATGTGAGCTTGGCTTCATGCCTAACGAGAGGGGCAGCAGCTGTTCCG
Seq A exon
ATATTGATGAATGTCAGAACAGGAGAGCGTGTCCATCTGGTCTCTGCTATAACACTTTGGGCTCATTCATGTGTTCTCCCTGTCCGGATGGGTTTGAAGGAAAAAACGGCCAATGTGTAG
Seq C2 exon
ATATAAATGAGTGTCTGGATAAAAGAGTGTGCGCTCATGGTCAGTGCTCTAATCTGGAGGGCTATTTCGTCTGCACGTGTGATGAAGGGTTCTTGCCCACTCCTGATGGCAAAAGCTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056922-'16-22,'16-21,18-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.1)
C2:
PF126622=cEGF=PU(82.6=45.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTCGACGAGTGTGCGGAG
R:
GCTTTTGCCATCAGGAGTGGG
Band lengths:
242-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]