BtaEX6043421 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019839 | LTBP1
Description
Bos taurus latent transforming growth factor beta binding protein 1 (LTBP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001103091]
Coordinates
chr11:15814581-15832529:+
Coord C1 exon
chr11:15814581-15814703
Coord A exon
chr11:15818777-15818896
Coord C2 exon
chr11:15832407-15832529
Length
120 bp
Sequences
Splice sites
3' ss Seq
TAGCTTTTTTATTTTTTCAGATG
3' ss Score
8.71
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
ATGTCGATGAGTGTCTGAGGCCGGACGTCTGTGGGGAAGGGCACTGTGTCAATACCATGGGGGCCTTCCGATGTGAATACTGCGATAGCGGGTACCACATGACCCCAGGAGGCCAGTGCGAGG
Seq A exon
ATGTTGATGAATGTTTGACTCCAAGTACTTGTCCAGATGAGCAGTGTGTGAATTCTCCCGGATCTTACCAGTGTGTTCCCTGCACGGAAGGGTTTCGAGGCTGGAACGGGCAGTGTCTTG
Seq C2 exon
ATGTGGACGAATGCCTGGAACCAAAGATCTGCACAAATGGTACTTGCTCCAACCTTGAAGGATCCTACATGTGTTCATGCCACAAGGGCTACAGCCCAACTCCAGACCACAAGCACTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019839-'49-40,'49-37,50-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.1),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTCGATGAGTGTCTGAGGC
R:
ACAGTGCTTGTGGTCTGGAGT
Band lengths:
242-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]