GgaEX1035306 @ galGal4
Exon Skipping
Gene
ENSGALG00000010361 | MBNL1
Description
Muscleblind-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5ZKW9]
Coordinates
chr9:22863561-22874966:-
Coord C1 exon
chr9:22874692-22874966
Coord A exon
chr9:22865391-22865561
Coord C2 exon
chr9:22863561-22863761
Length
171 bp
Sequences
Splice sites
3' ss Seq
GTGCTCCTTCTCTTCCCCAGGGG
3' ss Score
11.1
5' ss Seq
GTGGTATGT
5' ss Score
7.64
Exon sequences
Seq C1 exon
GCGCCCCCGGCCCCATGTGCCCCTAACGGAGCGGGAACCGCCTGGAGCCGCTCCGCCCGGCCCCGCTGCTGTGTTGGACGTTGACCCCGTAGGACCTAACGATGGCCGTCAGCGTCACGCCCATCCGCGACACCAAGTGGCTCACGCTGGAGGTGTGCCGGGAGTTCCAGAGGGGGACGTGCTCACGGCCGGACACGGAATGTAAATTTGCACACCCGTCGAAAAGCTGCCAGGTGGAGAACGGACGTGTCATCGCCTGCTTCGACTCATTGAAA
Seq A exon
GGGCGATGTTCGAGGGAGAACTGCAAGTACCTTCACCCGCCGCCGCACTTAAAAACGCAGCTGGAGATCAATGGCCGCAATAACCTGATCCAGCAGAAGAACATGGCCATGCTGGCCCAGCAGATGCAGCTTGCCAATGCCATGATGCCCGGAGCCCCGCTGCAGCCTGTG
Seq C2 exon
CCCATGTTCTCCGTTGCGCCCAGCCTAGCCACCAATGCCTCGGCTGCCTTCAACCCCTACCTGGGGCCCGTGTCCCCAGGGCTGGTGCCGGCGGAGATCCTGCCCACCGCGCCCATGCTGGTGGCGGGCAACCCTGGTGTCCCGGTGCCTGCTGCCGCCGCTGCTGCTGCGCAGAAGCTGATGAGGACGGACAGGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010361-'0-6,'0-2,7-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.121 A=0.018 C2=0.410
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0064219=zf-CCCH=PU(11.1=4.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAGCTGCCAGGTGGAGAAC
R:
TGTCCGTCCTCATCAGCTTCT
Band lengths:
247-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]