GgaEX1036622 @ galGal4
Exon Skipping
Gene
ENSGALG00000006992 | MMP9
Description
matrix metalloproteinase-9 precursor [Source:RefSeq peptide;Acc:NP_989998]
Coordinates
chr20:10918234-10918963:+
Coord C1 exon
chr20:10918234-10918382
Coord A exon
chr20:10918573-10918701
Coord C2 exon
chr20:10918790-10918963
Length
129 bp
Sequences
Splice sites
3' ss Seq
GATGGCACTTGTCCCCGCAGAGC
3' ss Score
10.42
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
GGTGATGAACTACTCCCCCGACCTGGACCGTGCCGTGATAGATGATGCCTTCCGGCGGGCATTCAAGGTGTGGAGTGATGTCACTCCCCTCACCTTCACCCAGATTTACAGCGGCGAGGCAGACATCATGATCATGTTCGGCAGCCAAG
Seq A exon
AGCATGGTGATGGGTACCCCTTCGACGGCAAGGATGGGCTCCTGGCCCACGCCTTTCCCCCCGGCAGTGGGATTCAGGGCGATGCCCACTTTGATGATGATGAGTTCTGGACTCTGGGAACCGGCTTAG
Seq C2 exon
AGGTGAAGACCCGCTATGGGAATGCCAACGGGGCCAGCTGCCACTTCCCCTTCATCTTTGAGGGCCGCTCCTACTCCCGGTGCATCACGGAGGGCCGCACGGATGGGATGCTGTGGTGTGCCACCACCGCCAGCTACGATGCCGACAAGACCTACGGCTTCTGCCCCAGCGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006992_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0041319=Peptidase_M10=FE(15.2=100)
A:
PF0041319=Peptidase_M10=FE(13.1=100)
C2:
PF0041319=Peptidase_M10=FE(17.6=100),PF0004014=fn2=WD(100=71.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATTCAAGGTGTGGAGTGA
R:
GTCTTGTCGGCATCGTAGCTG
Band lengths:
243-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]