RnoEX0055010 @ rn6
Exon Skipping
Gene
ENSRNOG00000017539 | Mmp9
Description
matrix metallopeptidase 9 [Source:RGD Symbol;Acc:621320]
Coordinates
chr3:161414456-161415414:+
Coord C1 exon
chr3:161414456-161414604
Coord A exon
chr3:161415003-161415131
Coord C2 exon
chr3:161415241-161415414
Length
129 bp
Sequences
Splice sites
3' ss Seq
CTCTCCGACCGCCTCTGCAGAGC
3' ss Score
7.85
5' ss Seq
CCGGTGAGA
5' ss Score
8.72
Exon sequences
Seq C1 exon
GATCCAAAGCTACACCGAAGACTTGCCGCGAGACGTGATCGATGACTCCTTCGCGCGCGCCTTCGCGGTGTGGAGCGCGGTGACACCGCTCACCTTCACCCGCGTGTACGGGCTCGAAGCAGACATTGTCATCCAGTTTGGTGTCGCGG
Seq A exon
AGCACGGGGACGGGTATCCCTTCGACGGCAAGGATGGTCTACTGGCACACGCCTTTCCCCCTGGCCCCGGCATTCAGGGAGATGCCCACTTCGACGACGACGAGTTGTGGTCGCTGGGCAAAGGCGCCG
Seq C2 exon
TGGTCCCCACTTACTTTGGAAACGCAAATGGTGCCCCATGTCACTTTCCCTTCACCTTCGAGGGACGCTCCTATTTGTCCTGCACCACGGATGGCCGCAACGACGGCAAGCCTTGGTGTGGCACGACAGCTGACTACGACACAGACAGAAAATATGGTTTCTGCCCCAGTGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017539-'4-3,'4-2,5-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0041319=Peptidase_M10=FE(15.2=100)
A:
PF0041319=Peptidase_M10=FE(13.0=100)
C2:
PF0041319=Peptidase_M10=FE(17.6=100),PF0004014=fn2=WD(100=71.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATCGATGACTCCTTCGCG
R:
GTGTCGTAGTCAGCTGTCGTG
Band lengths:
257-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]