DreEX0046926 @ danRer10
Exon Skipping
Gene
ENSDARG00000042816 | mmp9
Description
matrix metallopeptidase 9 [Source:ZFIN;Acc:ZDB-GENE-040426-2132]
Coordinates
chr8:24262312-24270694:+
Coord C1 exon
chr8:24262312-24262460
Coord A exon
chr8:24269885-24270013
Coord C2 exon
chr8:24270521-24270694
Length
129 bp
Sequences
Splice sites
3' ss Seq
AGCTGCTATTTGTGCTTCAGATC
3' ss Score
7.52
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GATTTTGAACTATTCGCCAGACATGGAAGCCTCTTTGATCGATGATGCTTTTGCCAGAGCTTTTAAAGTTTGGAGTGACGTCACCCCTCTGACGTTCACACGCCTCTTTGACGGCATTGCTGACATCATGATCTCTTTCGGGAAAGCAG
Seq A exon
ATCACGGTGATCCCTACCCCTTTGATGGAAAAGATGGGCTGCTGGCTCACGCTTATCCTCCAGGTGAAGGCACACAGGGAGACGCTCATTTTGATGACGATGAATACTGGACCCTTGGCTCTGGACCAG
Seq C2 exon
CCATTCAAACCCGCTACGGTAATGCTGAGGGTGCAATGTGTCACTTCCCCTTCCTGTTTGAGGGAACATCCTACTCCACCTGCACCACTGAGGGCCGCACAGATGGCCTTCCCTGGTGCTCAACCACCGCAGACTATGACAAGGACAAGAAGTTTGGCTTCTGTCCCAGTGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042816-'2-4,'2-3,8-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.114 C2=0.000
Domain overlap (PFAM):
C1:
PF0041319=Peptidase_M10=FE(15.2=100)
A:
PF0041319=Peptidase_M10=FE(13.1=100)
C2:
PF0041319=Peptidase_M10=FE(17.6=100),PF0004014=fn2=WD(100=71.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATGATGCTTTTGCCAGAGC
R:
CCTTGTCATAGTCTGCGGTGG
Band lengths:
254-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]