HsaEX0039685 @ hg38
Exon Skipping
Gene
ENSG00000100985 | MMP9
Description
matrix metallopeptidase 9 [Source:HGNC Symbol;Acc:HGNC:7176]
Coordinates
chr20:46010483-46011316:+
Coord C1 exon
chr20:46010483-46010631
Coord A exon
chr20:46010922-46011050
Coord C2 exon
chr20:46011143-46011316
Length
129 bp
Sequences
Splice sites
3' ss Seq
CTCTCGACCTGTTTCTTCAGAGC
3' ss Score
8.58
5' ss Seq
TCGGTGAGA
5' ss Score
8.51
Exon sequences
Seq C1 exon
GATCCAAAACTACTCGGAAGACTTGCCGCGGGCGGTGATTGACGACGCCTTTGCCCGCGCCTTCGCACTGTGGAGCGCGGTGACGCCGCTCACCTTCACTCGCGTGTACAGCCGGGACGCAGACATCGTCATCCAGTTTGGTGTCGCGG
Seq A exon
AGCACGGAGACGGGTATCCCTTCGACGGGAAGGACGGGCTCCTGGCACACGCCTTTCCTCCTGGCCCCGGCATTCAGGGAGACGCCCATTTCGACGATGACGAGTTGTGGTCCCTGGGCAAGGGCGTCG
Seq C2 exon
TGGTTCCAACTCGGTTTGGAAACGCAGATGGCGCGGCCTGCCACTTCCCCTTCATCTTCGAGGGCCGCTCCTACTCTGCCTGCACCACCGACGGTCGCTCCGACGGCTTGCCCTGGTGCAGTACCACGGCCAACTACGACACCGACGACCGGTTTGGCTTCTGCCCCAGCGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100985-'4-5,'4-4,7-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0041319=Peptidase_M10=FE(15.2=100)
A:
PF0041319=Peptidase_M10=FE(13.0=100)
C2:
PF0041319=Peptidase_M10=FE(17.6=100),PF0004014=fn2=WD(100=71.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTGATTGACGACGCCTTT
R:
GTAGTTGGCCGTGGTACTGC
Band lengths:
254-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development