GgaEX1037115 @ galGal3
Exon Skipping
Gene
ENSGALG00000008550 | F1NYZ1_CHICK
Description
NA
Coordinates
chr3:17032677-17046633:-
Coord C1 exon
chr3:17046599-17046633
Coord A exon
chr3:17036499-17036589
Coord C2 exon
chr3:17032677-17032723
Length
91 bp
Sequences
Splice sites
3' ss Seq
CTTTGTGTTTCTTTCTTCAGGTG
3' ss Score
13.15
5' ss Seq
CAGGTACGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
AAACTTACGAGGATTTTGAAACAAGAGTCATTGAG
Seq A exon
GTGAAAAATGTGTTTTGTATGAAGGCGAAGGAAGGCAGGAAAAAATCAATACGCGCCTTAGTGGCTGTTGGAAATGGTAAAGGGGCTGCAG
Seq C2 exon
GTTTTGCACTGGGGAAAGCAGGTGACAGGATGAACGCTTTACGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008550-'12-14,'12-12,15-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0033315=Ribosomal_S5=PU(10.3=58.3)
A:
PF0033315=Ribosomal_S5=FE(44.1=100)
C2:
PF0033315=Ribosomal_S5=FE(22.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTACGAGGATTTTGAAACAAGAGT
R:
TTCCGTAAAGCGTTCATCCTGT
Band lengths:
79-170
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]