GgaEX1037115 @ galGal4
Exon Skipping
Gene
ENSGALG00000008550 | MRPS5
Description
28S ribosomal protein S5, mitochondrial [Source:RefSeq peptide;Acc:NP_001186319]
Coordinates
chr3:15457675-15472570:-
Coord C1 exon
chr3:15472536-15472570
Coord A exon
chr3:15461497-15461587
Coord C2 exon
chr3:15457675-15457721
Length
91 bp
Sequences
Splice sites
3' ss Seq
CTTTGTGTTTCTTTCTTCAGGTG
3' ss Score
13.15
5' ss Seq
CAGGTACGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
AAACTTACGAGGATTTTGAAACAAGAGTCATTGAG
Seq A exon
GTGAAAAATGTGTTTTGTATGAAGGCGAAGGAAGGCAGGAAAAAATCAATACGCGCCTTAGTGGCTGTTGGAAATGGTAAAGGGGCTGCAG
Seq C2 exon
GTTTTGCACTGGGGAAAGCAGGTGACAGGATGAACGCTTTACGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008550_MULTIEX1-5/6=4-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.361 A=0.022 C2=0.000
Domain overlap (PFAM):
C1:
PF0033315=Ribosomal_S5=PU(10.3=58.3)
A:
PF0033315=Ribosomal_S5=FE(44.1=100)
C2:
PF0033315=Ribosomal_S5=FE(22.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTACGAGGATTTTGAAACAAGAGT
R:
TTCCGTAAAGCGTTCATCCTGT
Band lengths:
79-170
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]