Special

BtaEX6042426 @ bosTau6

Exon Skipping

Gene
Description
Bos taurus mitochondrial ribosomal protein S5 (MRPS5), mRNA. [Source:RefSeq mRNA;Acc:NM_001046123]
Coordinates
chr11:1902812-1906567:-
Coord C1 exon
chr11:1906533-1906567
Coord A exon
chr11:1905069-1905159
Coord C2 exon
chr11:1902812-1902858
Length
91 bp
Sequences
Splice sites
3' ss Seq
ATGGCCATTTTGTCCTCTAGGTG
3' ss Score
10.17
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
AAACGTATGATGATTTCGATACCAGGATACTTGAG
Seq A exon
GTGAGAAATGTTTTCAACATGACGGCCAAAGAGGGAAGGAAGAGATCCGTCCGTGTCCTGGTCGCTGTGGGGAACGGCAGAGGAGCCGCAG
Seq C2 exon
GTTTTGCCATTGGGAAAGCCACTGAACGGGCAGATGCTTTCAGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008241-'12-9,'12-8,13-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.417 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0033315=Ribosomal_S5=PU(10.3=58.3)
A:
PF0033315=Ribosomal_S5=FE(44.1=100)
C2:
PF0033315=Ribosomal_S5=FE(22.1=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTATGATGATTTCGATACCAGGA
R:
TTTCTGAAAGCATCTGCCCGT
Band lengths:
79-170
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]