RnoEX0055885 @ rn6
Exon Skipping
Gene
ENSRNOG00000015192 | Mrps5
Description
mitochondrial ribosomal protein S5 [Source:RGD Symbol;Acc:1308318]
Coordinates
chr3:120175912-120179059:+
Coord C1 exon
chr3:120175912-120175946
Coord A exon
chr3:120177282-120177372
Coord C2 exon
chr3:120179013-120179059
Length
91 bp
Sequences
Splice sites
3' ss Seq
ATGAGACATTCGTCTTTCAGGTA
3' ss Score
8.85
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
AAACCTATGAAGACTTTGATACCAGGATTCTTGAG
Seq A exon
GTAAGAAATGTTTTCAATATGACAGCAAAAGAGGGAAGAAAGAAGTCAGTCCGTGTCCTGGTTGCTGTTGGGAATGGAAACGGTGCTGCAG
Seq C2 exon
GTTTTGCCGTCGGGAAAGCCGCTGACCGGGCAGACGCTTTCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015192-'10-13,'10-11,13-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.458 A=0.177 C2=0.000
Domain overlap (PFAM):
C1:
PF0033315=Ribosomal_S5=PU(10.3=58.3)
A:
PF0033315=Ribosomal_S5=PD(76.3=93.5)
C2:
PF0033315=Ribosomal_S5=FE(22.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTATGAAGACTTTGATACCAGGA
R:
CTTTCTGAAAGCGTCTGCCCG
Band lengths:
80-171
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]