HsaEX0040208 @ hg19
Exon Skipping
Gene
ENSG00000144029 | MRPS5
Description
mitochondrial ribosomal protein S5 [Source:HGNC Symbol;Acc:14498]
Coordinates
chr2:95767422-95772202:-
Coord C1 exon
chr2:95772168-95772202
Coord A exon
chr2:95770385-95770475
Coord C2 exon
chr2:95767422-95767468
Length
91 bp
Sequences
Splice sites
3' ss Seq
TGAGACATTTTGCCTTTTAGGTA
3' ss Score
9.16
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
Exon sequences
Seq C1 exon
AAACATATGAGGATTTTGATACCAGGATACTTGAG
Seq A exon
GTAAGAAACGTTTTCACTATGACTGCGAAAGAGGGAAGAAAGAAATCGATCCGTGTCTTGGTGGCTGTGGGGAACGGAAAAGGAGCTGCAG
Seq C2 exon
GTTTTTCTATTGGGAAAGCTACTGATCGGATGGATGCTTTCAGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144029_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0033315=Ribosomal_S5=PU(10.3=58.3)
A:
PF0033315=Ribosomal_S5=FE(44.1=100)
C2:
PF0033315=Ribosomal_S5=FE(22.1=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATATGAGGATTTTGATACCAGGA
R:
TTCCTGAAAGCATCCATCCGA
Band lengths:
79-170
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)