GgaEX1038024 @ galGal3
Exon Skipping
Gene
ENSGALG00000005374 | MYO19
Description
NA
Coordinates
chr19:8090869-8091862:-
Coord C1 exon
chr19:8091760-8091862
Coord A exon
chr19:8091451-8091547
Coord C2 exon
chr19:8090869-8090945
Length
97 bp
Sequences
Splice sites
3' ss Seq
ACTTTATTTTCTGTCTCCAGATC
3' ss Score
11.48
5' ss Seq
AGGGTAAAG
5' ss Score
5.2
Exon sequences
Seq C1 exon
GTTCCACCATCTGAGTAGTGCTTCCATTCAGACTTTCCTTTTGGAGAAGACAAGAGTTGCCTATCAGGCCCCCAATGAAAGAAACTTTCATATATTTTATCAG
Seq A exon
ATCACAAAAGGTGCCACTGCAGAGGAGAGACTGGCATGGAACCTTCCAGAAGGGGCTCACTACCGCTGGCTGCCAAATTCTGAACGAAACTTAGAGG
Seq C2 exon
AGGACTGCTTCGAGGTGACCAGAGATGCAATGTTTCACTTGGGCATTGACCACTCCACGCAGAACAATATTTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005374-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.9=100)
A:
PF0006316=Myosin_head=FE(4.6=100)
C2:
PF0006316=Myosin_head=FE(3.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCATCTGAGTAGTGCTTCC
R:
ATTGTTCTGCGTGGAGTGGTC
Band lengths:
168-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]