MmuEX0030470 @ mm10
Exon Skipping
Gene
ENSMUSG00000020527 | Myo19
Description
myosin XIX [Source:MGI Symbol;Acc:MGI:1913446]
Coordinates
chr11:84894550-84897211:+
Coord C1 exon
chr11:84894550-84894652
Coord A exon
chr11:84895268-84895364
Coord C2 exon
chr11:84897121-84897211
Length
97 bp
Sequences
Splice sites
3' ss Seq
CTGTACACCCCTTCCCACAGATT
3' ss Score
9.21
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
AGCCCAGCAGATGACAGGAGCTGCAGTCCAGACCTACCTCCTAGAGAAAACCCGTGTGGCCTGTCAGGCCTCCAGTGAGAGGAACTTTCACATCTTCTACCAG
Seq A exon
ATTTGCAAAGGAGCCACCAAGGATGAAAGGCTCCAATGGCACCTCCCTGAGGGAACTGCCTTCTCCTGGCTACCCAATCCAGAAAGCAGTTTGGAAG
Seq C2 exon
GTCCTAGCTGGACTGCTGCACCTTGGCAATGTCCATTTTGTTGACTCAGAGGATGAAGCCCTGCCCTGCCAAGTGATGGATGATACCAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020527_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.024
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.2=100)
A:
PF0006316=Myosin_head=FE(4.9=100)
C2:
PF0006316=Myosin_head=FE(4.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATGACAGGAGCTGCAGTC
R:
ATCATCCATCACTTGGCAGGG
Band lengths:
180-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types