HsaEX0041093 @ hg38
Exon Skipping
Gene
ENSG00000278259 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr17:36513429-36514548:-
Coord C1 exon
chr17:36514446-36514548
Coord A exon
chr17:36513629-36513725
Coord C2 exon
chr17:36513429-36513505
Length
97 bp
Sequences
Splice sites
3' ss Seq
CCACCTACCCTTCTCCACAGATT
3' ss Score
10.56
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GGCTCAGCAAATGACTGGAGCCGCAGTCCAGACCTACCTCCTAGAGAAAACTCGAGTGGCCTGCCAGGCTTCCAGTGAGAGGAACTTCCACATCTTCTATCAG
Seq A exon
ATTTGCAAAGGAGCCAGTGAGGACGAGAGGCTCCAGTGGCACCTTCCTGAGGGAGCTGCCTTCTCCTGGCTGCCCAACCCAGAGAGGAGCTTAGAAG
Seq C2 exon
AGGATTGTTTTGAGGTGACCAGAGAGGCCATGCTCCATTTGGGCATTGACACCCCTACCCAGAACAACATCTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000278259-'37-45,'37-44,38-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=0.000 C2=0.027
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(12.8=100)
A:
PF0006316=Myosin_head=FE(12.0=100)
C2:
PF0006316=Myosin_head=FE(6.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGCAAATGACTGGAGCCG
R:
TGTTGTTCTGGGTAGGGGTGT
Band lengths:
170-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development