GgaEX1038144 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr10:10102246-10103837:+
Coord C1 exon
chr10:10102246-10102343
Coord A exon
chr10:10103552-10103638
Coord C2 exon
chr10:10103726-10103837
Length
87 bp
Sequences
Splice sites
3' ss Seq
GCATAACTCTGCTTTTTTAGGTT
3' ss Score
8.34
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
TTCCGGAGTTCTCTGTCTCTACTGATGGAGACACTCAACGCAACCACCCCTCACTACGTGCGATGCATAAAGCCTAATGATGAAAAGCGGCCTTTTGA
Seq A exon
GTTTGACTCAAAAAGGGTGGCTCAGCAACTGCGTGCATGTGGTGTTTTGGAAACCATTCGGATCAGTGCGCAGAGCTATCCGTCCAG
Seq C2 exon
ATGGACTTACATTGAGTTTTTCAGCCGCTACAGCATCCTTATGACGCAGCAGGAGCTCTCTGTCAATGATAAGAAGCAGATCTGCAAGATTGTTTTGCAGCGGCTAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004641-'18-17,'18-16,19-17=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.9=100)
A:
PF0006316=Myosin_head=FE(4.4=100)
C2:
PF0006316=Myosin_head=FE(5.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACACTCAACGCAACCACC
R:
CCGCTGCAAAACAATCTTGCA
Band lengths:
174-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]