DreEX0048734 @ danRer10
Exon Skipping
Gene
ENSDARG00000104235 | myo5c
Description
myosin VC [Source:ZFIN;Acc:ZDB-GENE-131127-196]
Coordinates
chr25:4667929-4679631:+
Coord C1 exon
chr25:4667929-4668035
Coord A exon
chr25:4677726-4677812
Coord C2 exon
chr25:4679420-4679631
Length
87 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTGTGCGTGTAGGTA
3' ss Score
8.95
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
GTCTCAAGGAAAACTTTCAGACTGACGTGTTTAAGGTGCTCGCCGCAATCCTGCATTTAGGAAATGTAATAATCAAGGCAAAGGACCCAGAGAAATCATTCATCGGT
Seq A exon
GTATGACTCCAGGCGTGTGGTTCAGCAGCTGAGGGCCTGCGGTGTGTTGGAAACCATCCGTATCAGCGCTCAAAGTTACCCATCCAG
Seq C2 exon
GACTCCAATCAGTACAAGTTTGGTCGGACCAAGATCTTCTTCCGGGCCGGGCAGGTGGCGTATCTGGAGAAGCTGCGTTTAGATCATCTGCGAGCGGCTTGTGTGACCATCCAGAAGCACGTGAGGGGCTGGAGACAAAGACGCAGCTTTCTGAACATCAGACAGGCGGCTCTCATCATACAGCTGTACGTGCGCGGGAAGAAGCAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104235_MULTIEX1-8/9=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.2=100)
A:
PF0006316=Myosin_head=FE(4.3=100)
C2:
PF0006316=Myosin_head=PD(2.1=19.7),PF0061222=IQ=WD(100=29.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACGTGTTTAAGGTGCTCGC
R:
GCCGCTCGCAGATGATCTAAA
Band lengths:
183-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]