DreEX0048730 @ danRer10
Exon Skipping
Gene
ENSDARG00000104235 | myo5c
Description
myosin VC [Source:ZFIN;Acc:ZDB-GENE-131127-196]
Coordinates
chr25:4673651-4676099:+
Coord C1 exon
chr25:4673651-4673791
Coord A exon
chr25:4674279-4674401
Coord C2 exon
chr25:4676016-4676099
Length
123 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTTGATATCTCGCAGTTC
3' ss Score
8.92
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
CACGTGTTTAAACTGGAGCAGGAGGAGTACATGAAGGAGGACATTCCCTGGACGCTGATCGATTTCTACGACAATCAGCCCGTTATTGATCTCATCGAGGCTAAGATGGGCATTCTGGACCTTCTAGATGAGGAGTGTCTG
Seq A exon
TTCCCGCAAGGCACTGATAAAAACTGGCTGCAAAAACTGTACAATTTTCTAGGCTCAAAGCCGCTGTTTGAGAAGCCTCGTTTGTCTAATGACTCTTTCATGATTCAGCATTTTGCTGATAAG
Seq C2 exon
GTAGAATATCAGTGTAAAGGTTTTTTGGAGAAGAACAGAGACACGCTTTATGAAGAGCTGGTGGATATCATGCGTGCTAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104235_MULTIEX1-4/9=3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.9=100)
A:
PF0006316=Myosin_head=FE(6.0=100)
C2:
PF0006316=Myosin_head=FE(4.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTGTTTAAACTGGAGCAGGA
R:
AGCACGCATGATATCCACCAG
Band lengths:
218-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]