GgaEX0006318 @ galGal4
Exon Skipping
Gene
ENSGALG00000004641 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr10:8343445-8344265:+
Coord C1 exon
chr10:8343445-8343585
Coord A exon
chr10:8343851-8343976
Coord C2 exon
chr10:8344182-8344265
Length
126 bp
Sequences
Splice sites
3' ss Seq
CTCCCTTCTCGCTTTTACAGTTG
3' ss Score
11.72
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
CATGTATTTAAACTTGAACAAGAGGAATATATGAAGGAAGATATCCCATGGACATTAATAGACTTTTACGACAACCAGCCTGTCATTGACCTTATTGAAGCCAAGATGGGAATTTTAGAGCTTTTGGATGAAGAGTGCTTG
Seq A exon
TTGCCCCATGGAACAGATGAAAACTGGCTTCAAAAGCTATATAATAATTTTGTCAACAAAAACACACTCTTTGAAAAGCCGAGGATGTCAAACACGTCTTTCATCATTCAACACTTTGCTGATAAG
Seq C2 exon
GTAGAATATAAATGTGAAGGATTTCTGGAGAAAAACAGGGATACAGTATATGAAGTTTTGATGGAAATCTTGAAAGAGAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004641_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.8=100)
A:
PF0006316=Myosin_head=FE(6.1=100)
C2:
PF0006316=Myosin_head=FE(4.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTGAACAAGAGGAATATATGAAGG
R:
TGCTCTCTTTCAAGATTTCCATCA
Band lengths:
212-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]