GgaEX0006318 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr10:10100237-10101057:+
Coord C1 exon
chr10:10100237-10100377
Coord A exon
chr10:10100643-10100768
Coord C2 exon
chr10:10100974-10101057
Length
126 bp
Sequences
Splice sites
3' ss Seq
CTCCCTTCTCGCTTTTACAGTTG
3' ss Score
11.72
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
CATGTATTTAAACTTGAACAAGAGGAATATATGAAGGAAGATATCCCATGGACATTAATAGACTTTTACGACAACCAGCCTGTCATTGACCTTATTGAAGCCAAGATGGGAATTTTAGAGCTTTTGGATGAAGAGTGCTTG
Seq A exon
TTGCCCCATGGAACAGATGAAAACTGGCTTCAAAAGCTATATAATAATTTTGTCAACAAAAACACACTCTTTGAAAAGCCGAGGATGTCAAACACGTCTTTCATCATTCAACACTTTGCTGATAAG
Seq C2 exon
GTAGAATATAAATGTGAAGGATTTCTGGAGAAAAACAGGGATACAGTATATGAAGTTTTGATGGAAATCTTGAAAGAGAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004641_CASSETTE3
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.0=100)
A:
PF0006316=Myosin_head=FE(6.2=100)
C2:
PF0006316=Myosin_head=FE(4.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTGAACAAGAGGAATATATGAAGG
R:
TGCTCTCTTTCAAGATTTCCATCA
Band lengths:
212-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]