BtaEX6053683 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003763 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr10:58215008-58220712:+
Coord C1 exon
chr10:58215008-58215148
Coord A exon
chr10:58217048-58217173
Coord C2 exon
chr10:58220629-58220712
Length
126 bp
Sequences
Splice sites
3' ss Seq
GGTTTGCTTTTCTCTTCCAGTTA
3' ss Score
9.07
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
CATGTCTTTAAACTTGAACAAGAAGAGTATATGAAGGAAGACATTCCTTGGACTCTGATAGACTTTTATGACAACCAACCAGTCATTGACCTGATTGAAGCAAAAATGGGCATTTTGGAGTTACTGGATGAAGAATGCTTG
Seq A exon
TTACCACATGGGACTGATGAAAACTGGCTTCAAAAGCTGTATAATAATTTTGTCAACAAAAACTCTTTGTTTGAAAAACCCAGAATGTCAAACACCTCCTTTATCATCCAGCACTTTGCAGATAAG
Seq C2 exon
GTAGAGTATAAATGTGAAGGTTTCCTTGAGAAGAACAGAGATACCGTCTATGACATGCTGGTTGAAATCCTGAGAGCAAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003763-'14-17,'14-16,15-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.8=100)
A:
PF0006316=Myosin_head=FE(6.1=100)
C2:
PF0006316=Myosin_head=FE(4.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTTTAAACTTGAACAAGAAGAGT
R:
GCTTGCTCTCAGGATTTCAACC
Band lengths:
220-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]