HsaEX6074812 @ hg19
Exon Skipping
Gene
ENSG00000128833 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:7604]
Coordinates
chr15:52540897-52545654:-
Coord C1 exon
chr15:52545514-52545654
Coord A exon
chr15:52543587-52543712
Coord C2 exon
chr15:52540897-52540980
Length
126 bp
Sequences
Splice sites
3' ss Seq
GGTTTATTTTTCTTTTCCAGTTA
3' ss Score
9.31
5' ss Seq
AAGGTACCG
5' ss Score
9.67
Exon sequences
Seq C1 exon
CATGTCTTCAAACTGGAACAAGAAGAATACATGAAGGAAGATATACCTTGGACGCTGATAGATTTTTATGACAATCAACCAGTTATTGACCTGATTGAAGCAAAAATGGGAATTCTGGAGTTACTGGATGAAGAATGTTTG
Seq A exon
TTACCACATGGAACTGATGAAAACTGGCTTCAAAAGCTGTATAATAATTTTGTCAACAGGAACCCTTTGTTTGAAAAGCCTAGAATGTCAAACACATCCTTTGTCATCCAGCACTTTGCTGATAAG
Seq C2 exon
GTAGAGTATAAATGTGAAGGTTTCCTGGAGAAAAACAGAGACACCGTCTATGACATGCTGGTTGAAATCCTGAGAGCAAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128833-'12-14,'12-12,13-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.8=100)
A:
PF0006316=Myosin_head=FE(6.1=100)
C2:
PF0006316=Myosin_head=FE(4.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGTCTTCAAACTGGAACAAGA
R:
GCTCTCAGGATTTCAACCAGCA
Band lengths:
218-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)