GgaEX1038144 @ galGal4
Exon Skipping
Gene
ENSGALG00000004641 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr10:8345454-8347045:+
Coord C1 exon
chr10:8345454-8345551
Coord A exon
chr10:8346760-8346846
Coord C2 exon
chr10:8346934-8347045
Length
87 bp
Sequences
Splice sites
3' ss Seq
GCATAACTCTGCTTTTTTAGGTT
3' ss Score
8.34
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
TTCCGGAGTTCTCTGTCTCTACTGATGGAGACACTCAACGCAACCACCCCTCACTACGTGCGATGCATAAAGCCTAATGATGAAAAGCGGCCTTTTGA
Seq A exon
GTTTGACTCAAAAAGGGTGGCTCAGCAACTGCGTGCATGTGGTGTTTTGGAAACCATTCGGATCAGTGCGCAGAGCTATCCGTCCAG
Seq C2 exon
ATGGACTTACATTGAGTTTTTCAGCCGCTACAGCATCCTTATGACGCAGCAGGAGCTCTCTGTCAATGATAAGAAGCAGATCTGCAAGATTGTTTTGCAGCGGCTAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004641-'19-18,'19-17,20-18
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.8=100)
A:
PF0006316=Myosin_head=FE(4.3=100)
C2:
PF0006316=Myosin_head=FE(5.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACACTCAACGCAACCACC
R:
CCGCTGCAAAACAATCTTGCA
Band lengths:
174-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]