GgaEX1040077 @ galGal4
Exon Skipping
Gene
ENSGALG00000002375 | NOTCH1
Description
notch 1 [Source:HGNC Symbol;Acc:HGNC:7881]
Coordinates
chr17:7826554-7828609:+
Coord C1 exon
chr17:7826554-7826667
Coord A exon
chr17:7827294-7827407
Coord C2 exon
chr17:7828376-7828609
Length
114 bp
Sequences
Splice sites
3' ss Seq
AATGTCTGCCTCTGTTTCAGGGT
3' ss Score
10.72
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GATACGAGGGCGTCTACTGTGAAATCAACACAGATGAGTGTGCCAGCAGCCCCTGCCTGCACAATGGCAACTGCCTGGATAAGATCAACGAGTTCCACTGCGAGTGCCCCACTG
Seq A exon
GGTTCAACGGGCACCTGTGCCAGTTTGACATCGATGAGTGTGCCAGCACCCCCTGCAAGAATGGGGCCAAGTGCGTGGATGGCCCCAACACCTACAGCTGCGAGTGCACCGAAG
Seq C2 exon
GTTTCTCAGGTGTTCACTGTGAGATCGACATCGATGAGTGCAACCCCGACCCGTGCCACTATGGGACCTGCAAGGACAGCATCGCCGCCTTCACCTGCCTCTGCCAGCCCGGCTACACGGGCCACCGCTGCGACATCAACATCAATGAGTGCCAGAGCCAGCCCTGCAGAAACGGGGGGACCTGTCAGGACAGGGACAACGCCTACAACTGTCTGTGCCTCAAGGGGACCACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002375-'8-12,'8-11,9-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=PD(25.0=25.6),PF0000822=EGF=PU(80.6=64.1)
A:
PF0000822=EGF=PD(16.1=12.8),PF0000822=EGF=PU(80.6=64.1)
C2:
PF0000822=EGF=PD(16.1=6.3),PF0000822=EGF=WD(100=38.0),PF0000822=EGF=PU(90.3=35.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAACGAGTTCCACTGCGAG
R:
GAGGCACAGACAGTTGTAGGC
Band lengths:
252-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]