RnoEX6015999 @ rn6
Exon Skipping
Gene
ENSRNOG00000019322 | Notch1
Description
notch 1 [Source:RGD Symbol;Acc:3187]
Coordinates
chr3:3925548-3927001:-
Coord C1 exon
chr3:3926888-3927001
Coord A exon
chr3:3926076-3926189
Coord C2 exon
chr3:3925548-3925781
Length
114 bp
Sequences
Splice sites
3' ss Seq
CTCCTCTTCCCTGGCCACAGGCT
3' ss Score
8.39
5' ss Seq
AAGGTACAA
5' ss Score
6.82
Exon sequences
Seq C1 exon
GTTATGAGGGTGTATACTGTGAGATCAACACGGACGAGTGTGCCAGCAGCCCCTGTCTACACAATGGCCGCTGCGTGGACAAGATCAACGAGTTCCTGTGTCAGTGTCCCAAAG
Seq A exon
GCTTCAGCGGGCACCTGTGCCAGTATGACGTGGATGAGTGCGCCAGCACACCATGCAAGAACGGCGCCAAGTGCCTGGATGGGCCCAACACCTACACCTGCGTGTGCACAGAAG
Seq C2 exon
GTTACACGGGGACCCACTGCGAGGTGGACATTGACGAGTGTGACCCTGACCCCTGTCACTATGGTTTGTGCAAGGATGGTGTGGCCACCTTTACCTGCCTCTGCCAGCCAGGCTACACAGGCCATCACTGTGAGACCAACATTAATGAGTGTCACAGCCAGCCGTGCCGCCATGGCGGCACCTGCCAGGACCGTGACAACTACTACCTCTGCTTATGCCTCAAGGGGACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019322-'12-12,'12-11,13-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=PD(25.0=25.6),PF0000822=EGF=PU(80.6=64.1)
A:
PF0000822=EGF=PD(16.1=12.8),PF0000822=EGF=PU(80.6=64.1)
C2:
PF0000822=EGF=PD(16.1=6.3),PF0000822=EGF=WD(100=38.0),PF0000822=EGF=PU(90.3=35.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCCTGTGTCAGTGTCCCA
R:
TCCCCTTGAGGCATAAGCAGA
Band lengths:
252-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]