GgaEX1040921 @ galGal4
Exon Skipping
Gene
ENSGALG00000003830 | NUP214
Description
nucleoporin 214kDa [Source:HGNC Symbol;Acc:HGNC:8064]
Coordinates
chr17:6115214-6120423:+
Coord C1 exon
chr17:6115214-6115316
Coord A exon
chr17:6117005-6117078
Coord C2 exon
chr17:6118678-6120423
Length
74 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTTCTTTCCTCCTAGGTC
3' ss Score
12.95
5' ss Seq
AAGGTTAGC
5' ss Score
5.61
Exon sequences
Seq C1 exon
GACAAGGGACAGCAAAAACCGTTACAGCTGTGACCTCTACAGTGGCGTCAGTACCAGCAACATCTGCACAGCCTAACAAGGCTTTCTCATTTTCTTCTGTGGG
Seq A exon
GTCTGGGTTTAATTTTGGTGTTGTCACGTCGGCTGCTTCATCACCGACACTGCCCAGCCTTGCTGCCTCACAAG
Seq C2 exon
CCCCTGCTAAGGAGTCCACTCAACCTGATTCATTTTCGCTTGCTGGGGGTTCCAAATTTGGAGCAGTCCCTGAGAGCTCCTTTGCTTTTGGCTCCCTCAAGCCAGCAAGTGCTTCTGGAGCCGCAGTAGCAAATAGCTCTTCAGCAGATGGCACTCAGTCAAACAAACCTGCTGCAACAATGTCTTCTGCTCCATCCACAGCCTCTGGCAAATTAGATATCCCTCAGTCTAAGCCAGGGGACACCTTGTTTCTGAGCAGTCTGTCCGGGGAAACTCTCGGGAGCTTCTCAGGACTGCGTGTTGGTCAAGCAGATGATAATGCCAAAACCACCACTAAAACACCATCTACCAGTGCTGCAGGAGCACAGTCAACTAAAGCATCTACATCACCTTCTGGGTTTGTCTTTGGTAGCCCCCTGATGTTAGGAAAAGCTGGAGAAGCTACTTCAACATCAGTCACGTCAGCTGGCACGGCACCCACCTCCATCAGCACCAGTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003830_CASSETTE6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.486 A=0.385 C2=0.654
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGTTACAGCTGTGACCTCT
R:
AAGCAAAGGAGCTCTCAGGGA
Band lengths:
173-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]