MmuEX1019006 @ mm10
Exon Skipping
Gene
ENSMUSG00000001855 | Nup214
Description
nucleoporin 214 [Source:MGI Symbol;Acc:MGI:1095411]
Coordinates
chr2:32030707-32034969:+
Coord C1 exon
chr2:32030707-32030797
Coord A exon
chr2:32031250-32031308
Coord C2 exon
chr2:32033203-32034969
Length
59 bp
Sequences
Splice sites
3' ss Seq
CTTCTTTTTCCACTCCTCAGGAC
3' ss Score
9.3
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTCAAGGGACAGCCAAGACAGAGTCCGCTGCGACCTCGACTCCATCTGCTGCAGGACAGCTCAACAAGCCTTTCTCATTCGCCTCCCCAGG
Seq A exon
GACCTTTACTTTTGGGACAATCACACCAACCCCATCTTCTAGTTTCACTGCCACACCAG
Seq C2 exon
GGGCAGGACCCCCTACTAAAGAGCCAACCCAGCTTGAGGCATTCTCATTTGGCGGGGGAGGCAAACCTTTCTCTGAGGCCATTCCTGGGAACTCCCCTGCCACAGGAGCAACATCGGCACCCAGCACTTCTGTAACAGCTGCCTCTCTGGAAGACTCTGCTCCATCCAGCAGCAAACCTGCAGCTCCTCCTGAAACTACTGTGTCCTCTGCTTCTAGCAAATTGGAAACTCCACCGTCCAAGTTAGGAGAGCTTCTGTTCCCAAGCTCTCTAGCTGGAGAGACGCTGGGGAGCTTCTCGGGCCTGCGTGTTGGCCAAGCTGAGGATTCTACTAAGCCAGTTAGTAAGGCCTCCTCCACAAACCTAGCTGGAGCCCAGCCAGCTAAGCCCTCAGGGGTTAGCTTTCCTAATACTTCAGTGTTAGGGAAGCCAGTGGAGCCCGCTGTGACCTCCTCTGTGAGCCCCGCCCCAGCAGCACCAGCCTCAGCTCTGAATGTGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001855-'59-63,'59-62,60-63
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.806 A=0.905 C2=0.689
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGGGACAGCCAAGACAGA
R:
AGAATGCCTCAAGCTGGGTTG
Band lengths:
135-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types