RnoEX0061723 @ rn6
Exon Skipping
Gene
ENSRNOG00000023393 | Nup214
Description
nucleoporin 214 [Source:RGD Symbol;Acc:1304977]
Coordinates
chr3:11040740-11047081:+
Coord C1 exon
chr3:11040740-11040827
Coord A exon
chr3:11043424-11043482
Coord C2 exon
chr3:11045327-11047081
Length
59 bp
Sequences
Splice sites
3' ss Seq
CGTCTTTTTCTACTCCTCAGGAC
3' ss Score
9.22
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTCCAGGGACGGCCAAGACAGAGTCACCTGTGACCTCCACCCCATCTACGGGGCAGCTCAACAAGCCTTTCTCATTCGCCTCCCCAGG
Seq A exon
GACCTTTACTTTTGGGACAATCACACCAGCCCCATCTTCTAGTTTCACTGCCACACCAG
Seq C2 exon
GGGCAGCACCCCCCACTAAAGAGTCAAACCAGCTTGAGGCGTTCTCATTTGGCGGGGGAGGCAAACCTTTTTGTGAGACCATTCCTGGAAACCCCCCTGCCACGGGACCCCCATCAGCACCCAGCACTTCTGTAACAACTACGTCTCTGGAAGACTCTGCTCCAACCAGCAGCAAACCTGCAACTCCTGAAACTCCTGTGTCCACTGCCTCTAGCAAATTGGAAACTCCACCATCCAAGTTAGGAGAGCTTCTCTTCCCAAGTTCTCTAGCTGGAGAGACGCTAGGGAGCTTCTCAGGACTGCGTGTTGGCCAGGCTGAGGAGTCTACAAAGCCCGTTAGTAAGGCCTCCTCCACAAACCTGGCCGGAGCCCAGCCAGCCAAGCCCTCAGGGTTTAGCTTTCCTGCTGCTTCCGTGTTAGGGAAGCCAGTGGAGCCCAGTGTGACGTCCTCTGCCCCAGCGGCACCAGTCTCAGCTCTGAGTGCGAGCACTAGCAGTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023393-'26-34,'26-32,29-34
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.847 A=0.557 C2=0.662
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGACCTCCACCCCATCTAC
R:
ACAAAAAGGTTTGCCTCCCCC
Band lengths:
134-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]