GgaEX1041609 @ galGal4
Exon Skipping
Gene
ENSGALG00000022962 | OVST
Description
ovostatin precursor [Source:RefSeq peptide;Acc:NP_990557]
Coordinates
chr1:75787239-75789830:-
Coord C1 exon
chr1:75789618-75789830
Coord A exon
chr1:75788199-75788322
Coord C2 exon
chr1:75787239-75787290
Length
124 bp
Sequences
Splice sites
3' ss Seq
ATTCCTCTTTCTGTTCTCAGATT
3' ss Score
11.56
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
AGTGTCTCATACACCATCCCTGACACCATCACTGAATGGAAGGCCAGTGCCTTCTGTGTGGAAGAATTGGCTGGATTTGGTATGTCTGTGCCTGCTACCCTGACAGCCTTCCAGCCTTTCTTTGTGGACTTGACCTTGCCATACTCCATCATTCATGGAGAAGATTTCCTGCTTAGAGCCAATGTCTTTAACTACCTCAATCACTGCATCAAG
Seq A exon
ATTAATGTTTTGCTGTTAGAATCCCTTGATTATCAAGCAAAACTCATCTCCCCAGAAGATGATGGATGTGTATGCGCCAAGATAAGAAAGTCCTATGTCTGGAATATTTTCCCCAAAGGAACTG
Seq C2 exon
CCTGAAGGCATAAGAAGGGAAGAGACCCAGAACTTCTTGATCTGCATGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022962_MULTIEX2-1/2=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0020717=A2M=FE(77.8=100)
A:
PF0020717=A2M=PD(4.4=9.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCATCCCTGACACCATCA
R:
TGCAGATCAAGAAGTTCTGGGT
Band lengths:
249-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]