MmuEX6007307 @ mm9
Exon Skipping
Gene
ENSMUSG00000047228 | BC048546
Description
cDNA sequence BC048546 [Source:MGI Symbol;Acc:MGI:3039594]
Coordinates
chr6:128505086-128508529:-
Coord C1 exon
chr6:128508301-128508529
Coord A exon
chr6:128507518-128507647
Coord C2 exon
chr6:128505086-128505204
Length
130 bp
Sequences
Splice sites
3' ss Seq
GGCCATTATTTTGTTTTTAGATT
3' ss Score
7.64
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
Exon sequences
Seq C1 exon
TTCCTCAGGCACAGCAAATGTCTCGTTCCTGGTCCCTGATACCATCACCCAGTGGGAGGCCAGCGCCTTCTGTGTCAATGGCAATGCTGGGTTTGGCATTTCACCCAAAGTGTCCCTACAGATCTCCCAGCCCTTCTTCGTGGAAGTTACCTCACCCTTTTCCGTTGTTCGAAGTGAACAGAGTGACATGGTTGTCACTGTCTTCAACTACCTGACTACATGTGTAGAG
Seq A exon
ATTTCTGTTCAGTTAGAAGCATCTGAGAATTATGAAGCAAGCATCAACACCCAGCGTAACACCGACAGTGAAGTCCTCCAGGCTGGAGAACAGAAAACATATGTCTGGACCATTATTCCTAAGACACTGG
Seq C2 exon
GTAAAGTAAATGTCACTGTAGTGGCTACATCCAAACAGAGCAGGGCTTGCCCAAATGACGCCAGTAAGGAGCAAGATGTCCACTGGAAAGACACTGTCGTCAAAACCATGCTGGTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047228-'18-19,'18-18,19-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.068 C2=0.150
Domain overlap (PFAM):
C1:
PF0020717=A2M=FE(83.5=100)
A:
PF0020717=A2M=PD(4.4=9.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCCTGATACCATCACCCA
R:
AAGCCCTGCTCTGTTTGGATG
Band lengths:
247-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: