BtaEX6024050 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005243 | OVOS2
Description
Bos taurus ovostatin 2 (OVOS2), mRNA. [Source:RefSeq mRNA;Acc:NM_001164024]
Coordinates
chr5:101164484-101168665:+
Coord C1 exon
chr5:101164484-101164712
Coord A exon
chr5:101165278-101165407
Coord C2 exon
chr5:101168547-101168665
Length
130 bp
Sequences
Splice sites
3' ss Seq
CTTCATGACTGTTATTTTAGATT
3' ss Score
5.31
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
CTCCTCCGGTTCAGCAAATCTTTCATTCACCATCCCTGATACTATAACGCAATGGGAAGCAAGTGGCTTCTGTGTGAACAGTGAGGCTGGATTTGGCATTTCATCAATAGCTTCTCTGGAAGCCTCCCAACCTTTCTTTGTTGAAATAACCTCCCCCTCTTCAGTTGTTCGGAATGAACGGTCTGATCTGATTGTCAGTGTCTTCAGCTACCTGAATACCTGTGTAGAG
Seq A exon
ATTTTCACTCAACTAGAAGCATCTCAGGATTTTGAGGCAGATATCAGTACCCCTAAAGACAACAGCAGTGAGATTATCCAAGCTTCAGAGAAAAAGACATATGTCTGGACTGTTACTCCTAAGAAGCTGG
Seq C2 exon
GTAAAGTGAATATCACTGTAGTTGCTGAGTCCAGGCAAAATAGTGCTTGCCCAAATGAAGCACCTGAGAGGCAGAACATGAACTGGAAAGATACTGTGATCAAAAGTCTGTTGGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005243-'17-19,'17-18,18-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.091 C2=0.275
Domain overlap (PFAM):
C1:
PF0020717=A2M=FE(83.5=100)
A:
PF0020717=A2M=PD(4.4=9.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGTGGCTTCTGTGTGAAC
R:
GTTCTGCCTCTCAGGTGCTTC
Band lengths:
248-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]