GgaEX1042987 @ galGal4
Exon Skipping
Gene
ENSGALG00000028622 | PEAR1
Description
platelet endothelial aggregation receptor 1 [Source:HGNC Symbol;Acc:HGNC:33631]
Coordinates
chr25:406164-406760:-
Coord C1 exon
chr25:406632-406760
Coord A exon
chr25:406429-406557
Coord C2 exon
chr25:406164-406292
Length
129 bp
Sequences
Splice sites
3' ss Seq
TCCCCTGACCCCACCACCAGCCT
3' ss Score
4.87
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
Exon sequences
Seq C1 exon
AGTGCCCTCCCGGCCGCTACGGAAAGAGGTGTGCACTGAGCTGCTCCTGTGCCAATGGCTCCTCCTGCCACCACGCCACCGGTGCCTGCCTCTGTGCTGCGGGCTGGAGCGGCCCCCACTGCTCCCAGC
Seq A exon
CCTGCACACCCGGCTCCTGGGGGGATGCCTGCTCCCAACGCTGCCAGTGTCACCAGAGGGGGACGTGTGACCCGGTCGAGGGGACGTGCCACTGCCCTGCGGGATGGACAGGAAGCAGCTGTGAAGAAG
Seq C2 exon
AGTGCCCCCCCGGGACTTTTGGATTGCAGTGTGAGCAGCTATGCCGCTGTCCCCACAATGCCACCTGCCACCCTGTGAGCGGGACGTGCCCGTGTGCCCCGGGCAGGAGCGGGCCCCACTGTGAGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028622-'16-22,'16-21,17-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(68.2=68.2)
A:
PF0005319=Laminin_EGF=PD(29.5=29.5),PF0005319=Laminin_EGF=PU(67.4=65.9)
C2:
PF0005319=Laminin_EGF=PD(30.2=29.5),PF0005319=Laminin_EGF=PU(85.3=65.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACGGAAAGAGGTGTGCAC
R:
CACGTCCCGCTCACAGGG
Band lengths:
202-331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]