DreEX0054597 @ danRer10
Exon Skipping
Gene
ENSDARG00000060753 | pear1
Description
platelet endothelial aggregation receptor 1 [Source:ZFIN;Acc:ZDB-GENE-091230-1]
Coordinates
chr16:30550335-30552990:+
Coord C1 exon
chr16:30550335-30550463
Coord A exon
chr16:30551297-30551422
Coord C2 exon
chr16:30552781-30552990
Length
126 bp
Sequences
Splice sites
3' ss Seq
TGCCAAATGTGTCTTTGTAGTGT
3' ss Score
7.06
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
CTTGTCCCGTTGGTCGATACGGAAGCCATTGTAGCAATGTGTGCAGGTGCACCAATAATGCAACATGTCATCACGAGGTTGGTTTGTGCATCTGTCCTGCTGGATGGACTGGATCAGACTGCTCTTTAT
Seq A exon
TGTGTCAAGCTGGGACGTTCGGCATTAACTGTGCCCAGACTTGCTCGTGTCCCCCAAACCATTCCTGTGACCCACACAATGGAGACTGTGTGTGTGAACCTGGACCAGGAGAGGCCTGTAAACCAG
Seq C2 exon
AGCAGGAGTTGAGTGTGATGGTGCCCGTGTCTCCGGTGGAGAGGGACTCGTGGGGTGCGATCGCAGGCATTGTGGTGCTGGTGATTCTGGTTGTGCTGCTGCTGGCCGTTCTGCTGTTGTATCGGCGCAGACAGCAGGACAAACAGAGCAACACACCCGTCGTCTCTTTCTCTTCTACACGCACCGTCAGTTCCGAGTATGCCGTGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060753_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.113
Domain overlap (PFAM):
C1:
PF126612=hEGF=WD(100=29.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGTCCCGTTGGTCGATACG
R:
ATACAACAGCAGAACGGCCAG
Band lengths:
251-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]