RnoEX6010121 @ rn6
Exon Skipping
Gene
ENSRNOG00000014243 | Pear1
Description
platelet endothelial aggregation receptor 1 [Source:RGD Symbol;Acc:1305653]
Coordinates
chr2:187117099-187117818:-
Coord C1 exon
chr2:187117690-187117818
Coord A exon
chr2:187117456-187117584
Coord C2 exon
chr2:187117099-187117311
Length
129 bp
Sequences
Splice sites
3' ss Seq
GCCTTCTTGGCTGTCTTTAGGCT
3' ss Score
9.03
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
CATGTCCCCCAGGCCACTGGGGACTCAAATGCTCCCAACCCTGCCAGTGTCATCATGGTGCCACCTGCCACCCCCAGGATGGGAGCTGTGTCTGCATCCCAGGCCGGACTGGACCCAACTGCTCGGAAG
Seq A exon
GCTGCCCATCAAGAATGTTTGGTGTCAACTGCTCCCAGCTATGTCAGTGTGATCCTGGAGAGATGTGCCACCCAGAGACTGGGGCTTGCGTCTGTCCCCCAGGACACAGTGGTGCGCACTGCAAAGTGG
Seq C2 exon
GCAGCCAGGAGTCCTTCACCATAATGCCCACCTCTCCTGTGATCCATAACTCACTGGGTGCCGTGATTGGCATTGCAGTGCTGGGGACCCTTGTGGTGGCCCTGGTAGCACTGTTTATTGGCTACCGACACTGGCAAAAGGGCAAGGAACATGAGCACTTGGCAGTGGCTTACAGCACTGGGCGACTGGATGGCTCCGATTACGTCATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014243-'26-30,'26-29,28-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.028
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(34.8=36.4)
A:
PF0005319=Laminin_EGF=PU(72.5=65.9)
C2:
PF0005319=Laminin_EGF=PD(25.0=13.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGGGGACTCAAATGCTCC
R:
CCCTTTTGCCAGTGTCGGTAG
Band lengths:
257-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]