MmuEX6071817 @ mm10
Exon Skipping
Gene
ENSMUSG00000028073 | Pear1
Description
platelet endothelial aggregation receptor 1 [Source:MGI Symbol;Acc:MGI:1920432]
Coordinates
chr3:87751854-87756764:-
Coord C1 exon
chr3:87756552-87756764
Coord A exon
chr3:87752472-87752600
Coord C2 exon
chr3:87751854-87751942
Length
129 bp
Sequences
Splice sites
3' ss Seq
GCCTTCTTGGCTGTCTTTAGGCT
3' ss Score
9.03
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GTGCCAAGAAGAGTGCCCCGTGGGCCGCTTCGGTCAAGACTGTGCTGAGACCTGTGACTGTGCTCCTGGCGCCCGTTGCTTTCCTGCTAATGGCGCGTGTCTGTGTGAACATGGCTTCACAGGCGACCGCTGCACTGAGCGCCTCTGTCCGGATGGCCGCTATGGTCTGAGCTGCCAGGAGCCCTGCACCTGCGACCCAGAACACAGTCTCAG
Seq A exon
GCTGCCCACCAAGAATGTTTGGTGTCAACTGCTCCCAGCTATGTCAGTGTGATCTCGGAGAGATGTGCCACCCAGAGACTGGGGCTTGTGTCTGTCCCCCAGGACACAGTGGTGCAGACTGCAAAATGG
Seq C2 exon
ATGTCTCTCCGAGCTATAGTCACTACTACTCCAACCCCAGCTACCACACACTGTCTCAGTGTTCTCCTAACCCCCCACCCCCTAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028073_MULTIEX1-8/13=C1-10
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.467
Domain overlap (PFAM):
C1:
PF126612=hEGF=PD(7.7=1.4),PF0005319=Laminin_EGF=WD(100=61.1)
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTCAAGACTGTGCTGAGAC
R:
ACTGAGACAGTGTGTGGTAGCT
Band lengths:
243-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types