BtaEX6014294 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012405 | PEAR1
Description
Bos taurus platelet endothelial aggregation receptor 1 (PEAR1), mRNA. [Source:RefSeq mRNA;Acc:NM_001101300]
Coordinates
chr3:13989531-13990294:-
Coord C1 exon
chr3:13990166-13990294
Coord A exon
chr3:13989934-13990062
Coord C2 exon
chr3:13989531-13989743
Length
129 bp
Sequences
Splice sites
3' ss Seq
CCTCTTCCACTTTCTCCCAGGCT
3' ss Score
8.92
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
CATGCCCTTTGGGACACTGGGGAGCCAACTGTGCCCAGCTCTGCCAGTGTCGCCATGGTGGGACCTGCCACCCCCAGGATGGGAGCTGTTTCTGTCCCCCAGGCTGGACCGGACATCTCTGCTTGGAAG
Seq A exon
GCTGTTCTCCAGGGATGTTTGGTGCCAACTGCTCCCAACCGTGCCAGTGTGGTCCTGGAGAGAGGTGCCACCCAGAGACTGGGGCCTGTGTGTGTCCTCCAGGGCACAGTGGTGCCCCCTGCAGGATCG
Seq C2 exon
GAAGCCAGGAGCCGATCACCATGATGCCCACCCCTCCGGTGGCCTATAACTCGCTTGGGGCAGTGATTGGCATCGCAGTGCTGGGGTCCCTGGTGGTGGCCCTGGTGGCGCTGTTCATTGGCTACCGTCACTGGCAAAAGGGCAAGGAGCATCAGCACCTGGCAGTGGGCTACAGCAGCGGACGACTGGACGGCTCTGAGTATGTCATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012405-'21-29,'21-28,22-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.042
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(30.2=29.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGGAGCTGTTTCTGTCCC
R:
ATACTCAGAGCCGTCCAGTCG
Band lengths:
255-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]