MmuEX6071817 @ mm9
Exon Skipping
Gene
ENSMUSG00000028073 | Pear1
Description
platelet endothelial aggregation receptor 1 [Source:MGI Symbol;Acc:MGI:1920432]
Coordinates
chr3:87556029-87556758:-
Coord C1 exon
chr3:87556630-87556758
Coord A exon
chr3:87556394-87556522
Coord C2 exon
chr3:87556029-87556241
Length
129 bp
Sequences
Splice sites
3' ss Seq
GCCTTCTTGGCTGTCTTTAGGCT
3' ss Score
9.03
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
CATGTCCCCCAGGCCACTGGGGACTCAAATGCTCCCAACTCTGCCAGTGTCATCATGGTGGGACCTGCCACCCCCAGGATGGGAGCTGTATCTGCACGCCAGGCTGGACTGGACCCAACTGCTTGGAAG
Seq A exon
GCTGCCCACCAAGAATGTTTGGTGTCAACTGCTCCCAGCTATGTCAGTGTGATCTCGGAGAGATGTGCCACCCAGAGACTGGGGCTTGTGTCTGTCCCCCAGGACACAGTGGTGCAGACTGCAAAATGG
Seq C2 exon
GAAGCCAGGAGTCCTTCACCATAATGCCCACCTCTCCCGTGACCCATAACTCACTGGGTGCAGTGATTGGCATTGCAGTACTGGGAACCCTCGTGGTGGCCCTGATAGCACTGTTCATTGGCTACCGCCAGTGGCAAAAGGGCAAGGAACATGAGCACTTGGCAGTGGCTTACAGCACTGGGCGGCTGGATGGCTCTGATTACGTCATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028073-'25-29,'25-28,26-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.042
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(27.9=27.3),PF126612=hEGF=WD(100=29.5)
A:
PF0005319=Laminin_EGF=PU(69.6=74.4)
C2:
PF0005319=Laminin_EGF=PD(26.1=16.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAACTCTGCCAGTGTCATC
R:
ATGTTCCTTGCCCTTTTGCCA
Band lengths:
248-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: