GgaEX1042988 @ galGal4
Exon Skipping
Gene
ENSGALG00000028622 | PEAR1
Description
platelet endothelial aggregation receptor 1 [Source:HGNC Symbol;Acc:HGNC:33631]
Coordinates
chr25:405858-406557:-
Coord C1 exon
chr25:406429-406557
Coord A exon
chr25:406164-406292
Coord C2 exon
chr25:405858-406073
Length
129 bp
Sequences
Splice sites
3' ss Seq
CACCCTCTGTACCCCCGCAGAGT
3' ss Score
10.18
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
CCTGCACACCCGGCTCCTGGGGGGATGCCTGCTCCCAACGCTGCCAGTGTCACCAGAGGGGGACGTGTGACCCGGTCGAGGGGACGTGCCACTGCCCTGCGGGATGGACAGGAAGCAGCTGTGAAGAAG
Seq A exon
AGTGCCCCCCCGGGACTTTTGGATTGCAGTGTGAGCAGCTATGCCGCTGTCCCCACAATGCCACCTGCCACCCTGTGAGCGGGACGTGCCCGTGTGCCCCGGGCAGGAGCGGGCCCCACTGTGAGGCTG
Seq C2 exon
GGAACCCCGACCAGCCCTACACCATCGTGCCAGCCCCCCCGTTGGCCTACAGCACGCTGGGGATGGTGGTCAGCCTGGTGGCCCTGGTGGCTCTGCTGGTGGCCGTGGTGGCTGTGGCACTGTGCTACCGCCACCGGCAGAAGGGAAAGGAGAACAGACACCTGGCCGTGGCGTACACAGCAGGACGGACGGACACCTCTGAGTACGTGGTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028622-'17-24,'17-22,18-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.192
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(29.5=29.5),PF0005319=Laminin_EGF=PU(67.4=65.9)
A:
PF0005319=Laminin_EGF=PD(30.2=29.5),PF0005319=Laminin_EGF=PU(85.3=65.9)
C2:
PF0005319=Laminin_EGF=PD(11.8=5.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGACAGGAAGCAGCTGTG
R:
CTGGCACCACGTACTCAGAGG
Band lengths:
243-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]