DreEX6087552 @ danRer10
Exon Skipping
Gene
ENSDARG00000017229 | megf10
Description
multiple EGF-like-domains 10 [Source:ZFIN;Acc:ZDB-GENE-080506-1]
Coordinates
chr10:16188567-16189173:+
Coord C1 exon
chr10:16188567-16188695
Coord A exon
chr10:16188807-16188935
Coord C2 exon
chr10:16189045-16189173
Length
129 bp
Sequences
Splice sites
3' ss Seq
CCTGTCTTCTTGTCCTGCAGGAT
3' ss Score
12.67
5' ss Seq
CGAGTCAGT
5' ss Score
0.53
Exon sequences
Seq C1 exon
CATGTCCTCCGGGTCAGTGGGGTCCCAACTGCATTCACACTTGCAACTGTCACAATGGAGCATTCTGCAGTGCTTATGACGGCGAGTGTAAATGTACGGCCGGCTGGACAGGTCTCTACTGCACACAAA
Seq A exon
GATGTCCATTGGGTTTCTATGGTAAGGATTGTGTGCAGGCATGTCAATGTGAGAATGGTGCAGACTGCAATCACATCTCGGGTCAGTGCACATGCCGTACAGGCTTCATGGGACGTCACTGTGAAACGA
Seq C2 exon
AATGTCCTGCGGGTTCATATGGATATGGCTGCCGGCAAGTTTGTGATTGTCTCAATAACTCCACCTGTGATCACATGACTGGCACATGTTACTGCAACCCGGGCTGGAAAGGCACACGATGTGATCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017229-'23-24,'23-23,24-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(28.6=27.3)
A:
PF0005319=Laminin_EGF=PU(63.0=65.9)
C2:
PF0005319=Laminin_EGF=PD(34.8=36.4),PF0005319=Laminin_EGF=PU(75.0=75.0),PF0200911=Rifin_STEVOR=PU(12.5=18.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTCCTCCGGGTCAGTGG
R:
ACATCGTGTGCCTTTCCAGC
Band lengths:
250-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]