BtaEX6039616 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000329 | MEGF10
Description
Bos taurus multiple EGF-like-domains 10 (MEGF10), mRNA. [Source:RefSeq mRNA;Acc:NM_001046451]
Coordinates
chr7:27836761-27843107:-
Coord C1 exon
chr7:27842979-27843107
Coord A exon
chr7:27840363-27840491
Coord C2 exon
chr7:27836761-27836889
Length
129 bp
Sequences
Splice sites
3' ss Seq
TGTCCTTCCTTCCCGCACAGGAT
3' ss Score
11.01
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
CTTGTCCCCCTGCGCACTGGGGCCCGAACTGCATCCATACATGCAACTGCCACAACGGGGCCTTCTGCAGCGCCTACGACGGGGAATGCAAATGCACTCCGGGCTGGACGGGGCTCTACTGCACTCAGA
Seq A exon
GATGTCCCCTGGGCTTCTATGGAAAGGACTGTGCGTTGGTATGCCAGTGTCAAAACGGAGCCGACTGCGACCACATCTCCGGGCAGTGTACTTGCCGCACTGGCTTCATGGGGAAGCATTGCGAACAGA
Seq C2 exon
AGTGCCCTGCAGGAACGTATGGCTATGGCTGTCGCCAGATATGTGACTGTCTGAACAACTCTACCTGTGACCACATCACCGGAACCTGTTACTGCAGCCCAGGATGGAAGGGGGCACGATGTGATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000329-'21-18,'21-17,22-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005319=Laminin_EGF=PU(63.0=65.9)
C2:
PF0005319=Laminin_EGF=PD(34.8=36.4),PF0005319=Laminin_EGF=PU(82.5=75.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGTCCCCCTGCGCACT
R:
TTGATCACATCGTGCCCCCTT
Band lengths:
257-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]